Something else to look for when you're doing the winter work. Yamaha, with their great materials engineering capabilities, has the copper tstat in contact with the aluminum block. In salt water, that means the block loses and gets corroded away. In my case, the hole squirted salt water into the intake causing internal corrosion and engine failure. New powerhead was needed. While working the engine, the Yam certified mechanic, who was quite good, found the dry corrosion in both engines, which was fixed.
Be sure to check the tstat housing to see if there's corrosion. My problem was on the stbd engine and I checked the port engine and there was definitely corrosion but not as bad as the stbd. I cleaned it thoroughly and applied Alumbond to the block, inside and out (to prevent the squirting into the intake) as well onto the tstat "arms" to prevent direct copper-aluminum contact.
I bought the boat with 170 hrs on it and this happened at 300 total hours. I have no idea if the previous owner flushed, but since I have owned the boat, it's flushed regularly, usually with salt-away. I attribute this to a piss-poor design. Something to definitely check whenever you're doing the tsats.